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|
Name
|
Nucleotide substitution
|
Nucleotide gap
|
Amino acid substitution
|
dN/dS
|
Presumptive status
|
|---|
|
A. Differences between Nigerian and Asashima lines, and presumptive status
|
|
Tr1
|
20
|
6
|
10
|
0.396
|
active?
|
|
Tr2
|
11
|
24
|
frame-shift
|
–
|
active?
|
|
Tr3
|
5
|
0
|
3
|
1.006
|
domestication?
|
|
Tr4
|
11
|
12
|
7
|
0.501
|
ancient domestication
|
|
Tr5
| | | | |
currently active
|
|
Tr6
|
1
|
0
|
1
|
dS = 0
|
currently active
|
|
Tr7
|
9
|
0
|
7
|
0.696
|
currently active
|
|
Tr8
|
26
|
0
|
21
|
1.057
|
currently active
|
|
Tr9
| | | | |
currently active
|
|
Tr10
|
5
|
0
|
1
|
0.084
|
ancient domestication
|
|
Tr11
| | | | |
currently active
|
|
Tr12
|
205
|
991
|
frame-shift
|
–
|
active?
|
|
Tr13
|
26
|
0
|
8
|
0.173
|
ancient domestication
|
|
Tr14
| | | | |
currently active
|
|
Tr15
|
0
|
3
|
0
|
dS = 0
|
currently active
|
|
Tr16
|
3
|
0
|
2
|
0.527
|
ancient domestication
|
|
Tr17
|
24
|
0
|
13
|
0.434
|
domestication?
|
|
Tr18
|
15
|
0
|
9
|
0.504
|
domestication?
|
|
Tr19
|
4
|
30
|
4
|
dS = 0
|
ancient domestication
|
|
Tr20
|
53
|
0
|
29
|
0.403
|
currently active
|
|
Tr21
| | | | |
currently active
|
|
Tr22
|
0
|
0
|
0
|
dS = 0
|
currently active
|
|
Tr23
| | | | |
currently active
|
|
Tr24
|
57
|
6
|
23
|
0.28
|
domestication?
|
|
Tr25
| | | | |
active?
|
|
Tr26
|
15
|
0
|
3
|
0.058
|
domestication?
|
|
Tr27
|
55
|
0
|
19
|
0.118
|
active?
|
|
Tr28
|
9
|
0
|
6
|
0.629
|
ancient domestication
|
|
Tr29
|
27
|
0
|
12
|
0.312
|
ancient domestication
|
|
Tr30
|
5
|
0
|
2
|
0.328
|
ancient domestication
|
|
Tr31
|
21
|
3
|
11
|
0.359
|
ancient domestication
|
|
Tr32
|
7
|
0
|
6
|
1.444
|
domestication?
|
|
Tr33
|
30
|
0
|
8
|
0.14
|
ancient domestication
|
|
Tr34
|
23
|
0
|
9
|
0.192
|
domestication?
|
|
Tr35
| | | | |
active?
|
|
Tr36
| | | | |
active?
|
|
Tr37
| | | | |
domestication?
|
|
Tr38
|
12
|
0
|
5
|
0.196
|
domestication?
|
|
B. Differences between X. laevis and X. tropicalis, and presumptive status
|
|
Lv1
| | | | |
currently active
|
|
Lv2
|
466
|
237
|
202
|
0.285
|
domestication?
|
|
Lv3
|
472
|
63
|
210
|
0.194
|
currently active
|
|
Lv4
|
263
|
6
|
110
|
0.257
|
ancient domestication
|
|
Lv5
| | | | |
domestication?
|
|
Lv6
| | | | |
currently active
|
|
Lv7
|
289
|
51
|
140
|
0.391
|
ancient domestication
|
|
Lv8
|
293
|
57
|
141
|
0.301
|
ancient domestication
|
|
Lv9
|
303
|
42
|
154
|
0.341
|
ancient domestication
|
|
Lv10
|
302
|
36
|
161
|
0.463
|
ancient domestication
|
|
Lv11
|
335
|
42
|
172
|
0.358
|
ancient domestication
|
|
Lv12
|
546
|
252
|
213
|
0.100
|
domestication?
|
|
Lv13
|
359
|
198
|
164
|
0.365
|
ancient domestication
|
|
Lv14
|
305
|
36
|
155
|
0.413
|
ancient domestication
|
|
Lv15
|
411
|
393
|
157
|
0.195
|
domestication?
|
|
Lv16
|
305
|
36
|
162
|
0.349
|
ancient domestication
|
|
Lv17
|
331
|
54
|
162
|
0.336
|
ancient domestication
|
|
Lv18
| | | | |
domestication?
|
|
Lv19
|
335
|
69
|
156
|
0.328
|
ancient domestication
|
|
Lv20
|
323
|
66
|
165
|
0.497
|
ancient domestication
|
|
Lv21
|
312
|
33
|
166
|
0.472
|
ancient domestication
|
|
Lv22
|
356
|
72
|
193
|
0.521
|
ancient domestication
|
|
Lv23
|
591
|
294
|
240
|
0.153
|
active?
|
|
Lv24
| | | | |
domestication?
|
- (A) Differences between Nigerian and Asashima lines and (B) differences between X. laevis and X. tropicalis. X. tropicalis CDSs used in the analysis of differences with those of X. laevis are indicated by asterisks in Table 3B. The last column indicates the presumptive status of each XKol transposase
